Blogs

explain my data
Machine learning and data analysis
φ-node
The messy business of translating programs into faster programs.

Projects

immuno
Computation pipeline for selecting peptide contents of personalized therapeutic cancer vaccines.
pyensembl
Python interface to the Ensembl gene annotation database.
pepdata
Python interface to immunology and bioinformatics datasets
varcode
Genetic variant effect annotation in Python
Parakeet
An optimizing just-in-time compiler for an array-oriented subset of Python
CudaTree
GPU Random Forest library for Python
GenePool
A basic framework for implementing genetic algorithms in OCaml.
Texture Synthesis
An implementation of Efros & Leung's texture synthesis algorithm in Matlab, and some pretty results.
ocaml_llvm
A toy compiler for a mini-language implemented with OCaml and LLVM
Falcon
A faster register-based virtual machine for Python (primarily by Russell Power)
TreeLearn
Decision tree learning algorithms for Python.
Yasper
simple single-header reference counting smart pointer for C++
Parsnip
packrat parser combinator library for C++

Writing & Presentations

email: alex.rubinsteyn @ google's email service